European Protein Data Bank now connected with the Alphafold Protein Structure Database directly to Claude and other MCP-compatible AI systems.

LLMs can describe protein structures.
But until now, they couldn’t actually access PDBe’s live data.

No fresh depositions.
No schema-aware search.
No graph exploration.
No structured retrieval.

So we built the bridge.

What can you build with it?

→ Ask Claude about any PDB entry in plain English.
→ Generate Cypher queries with schema awareness.
→ Build structural biology copilots.
→ Create lab assistants powered by live PDBe data.
→ Explore protein structure graphs interactively.

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Connect Claude to PDBe in 3 steps:

1️⃣ Install uv
2️⃣ Run:
uvx pdbe-mcp-server --server-type pdbe_api_server
3️⃣ Add config to Claude Desktop

Now ask, for example:
“Find X-ray structures for UniProt P12345”

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